NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134079_10716846

Scaffold Ga0134079_10716846


Overview

Basic Information
Taxon OID3300014166 Open in IMG/M
Scaffold IDGa0134079_10716846 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)512
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_68_14(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053275Metagenome / Metatranscriptome141Y
F070455Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0134079_107168461F070455N/AMTLDAGLRATIKRDKFGMSTGTHIRVFGPNLSELAQRDGQFHVHADDCPDHQHYGPEGKFGGVDDYGDRLTVSSREELVKFVYPPGEF
Ga0134079_107168462F053275N/AGDCTIETVGGPAPGTDPAWSGNLQDPAPTVNLVEGGAWLRLADGRECEIQVERAVAGSGLTEFSGAKGIQDLH*

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