NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181517_10023296

Scaffold Ga0181517_10023296


Overview

Basic Information
Taxon OID3300014160 Open in IMG/M
Scaffold IDGa0181517_10023296 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4208
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036667Metagenome169Y
F040593Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0181517_100232965F036667N/AMISLSEQVSPAPSAPRKWDAEIDAARQQDQWLAFESDLHQSTALRARVVRALDRYSLGTSDIAVDEALDYLIHKELGQSARYFNRTGKAQFNQQQITHAVLSFMARKEQQRHLTDLAIHEEDTDHDDDIPGSIRASHLPDPCHLTPDEYAARRDALRAIHAMIPEPDRELYDLMLAVREPGTLARVESYARRERIGRSTVYFRIEKLAQAIQRHPWFDEITVPFRAIHRPA*
Ga0181517_100232968F040593N/AMRVKLLVQTQEFQSWPATKERAASTSHNLVCVDMSQPADARMTESISYRLKDEEIPKYWDKAMDKVIEVNLRRIAHSKSGKASIIGEIVESTPVK*
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