NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181530_10012129

Scaffold Ga0181530_10012129


Overview

Basic Information
Taxon OID3300014159 Open in IMG/M
Scaffold IDGa0181530_10012129 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7359
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010071Metagenome / Metatranscriptome308Y
F016632Metagenome / Metatranscriptome245Y

Sequences

Protein IDFamilyRBSSequence
Ga0181530_1001212914F010071GAGGMNCLANLALSVGETFFHEAGRLLFGVALGGAKALLGTPQPLGTRQLALNHALQKKAVDGALLAGPRTGKEYAKFTLKKGLPADQRPRTLAVENEPHSVDDFNGVIKEGYGKGEKRLIYSGTGVIKVDGSSQLGKINVHEHDAEKAGLHYDFVAEGVDPNTQSFEVNIPSGVLKGRYAFRQAFEK
Ga0181530_100121294F016632AGGAGGLTGILEVFALAEIGSGIGFLASWRNKVLKAKVNYFRQPNDRPSPFDKVLRAKVGRAFTRQDRLRLQLADGLVNLIRKLVQYEAFRQIVRGLALAHSPMRQALRKKGGRSS*
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