NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181539_1008894

Scaffold Ga0181539_1008894


Overview

Basic Information
Taxon OID3300014151 Open in IMG/M
Scaffold IDGa0181539_1008894 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7058
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F020738Metagenome / Metatranscriptome222Y
F045709Metagenome / Metatranscriptome152Y
F070426Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0181539_10088941F020738N/AAAVISIAFGFLGRRRPKDRIKYILWSFFLFLVVGVGIAWAMYPFSR*
Ga0181539_10088946F070426GGAGGMILELMVVTEASALSASWIKQSRMRRQQILLGGSTPEIKLPFLDQHLRQQTPNATRFQTFAAQKLAGVCRSAVHTRAFELLVLKLIQSASRRYRRESEISKVKVIL*
Ga0181539_10088947F045709AGGVTLTPSQKGSFLAGVGLWVLIWASLWKADDIAGAMRIQRWFNSTRCLRWIGQHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLLLPCLERLLRQRSTATTVLQ*
Ga0181539_10088948F014894AGGAMSIGIPGISVYFEHTQIKPFIKDHSKKARELFNERVVPTVLRGTCQALEVVANNTADAHDYLIAKLKTKQSA*
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