NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181539_1000035

Scaffold Ga0181539_1000035


Overview

Basic Information
Taxon OID3300014151 Open in IMG/M
Scaffold IDGa0181539_1000035 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)130620
Total Scaffold Genes119 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)67 (56.30%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000737Metagenome / Metatranscriptome914Y
F013877Metagenome / Metatranscriptome267Y
F032071Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0181539_1000035107F000737AGGALRVKLGGSILALMVLENGRQVRGRLSQLSVNGGLVSVEQPLDEGIRVTVLFHLGITSIRCRVHMLFPMWATQGCLQPFRFLELPEASRAGLNRELENLVRAGASQEEEAE*
Ga0181539_1000035119F032071AGGAGMSEKQCAFEGDDSPERNRYRLLLEVTDLVARAESLPDAFKKLAPPVLALTGGELLNLSLHDPRRNCMLSQYWKKNQESGEFDAFPVDEAASGWAWKHQEPIA
Ga0181539_100003519F013877N/AMEGQEVQVELKYCERCGGLWLRLQGASGVYCANCRVRLAAMPNPGEAPPRKARRRKARAQGRDVQGENVQSPARIEYLEGVAAMEVWA*
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