NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120154_1041558

Scaffold Ga0120154_1041558


Overview

Basic Information
Taxon OID3300013501 Open in IMG/M
Scaffold IDGa0120154_1041558 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A35_65cm_0.25M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1116
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F001935Metagenome / Metatranscriptome615Y
F002111Metagenome / Metatranscriptome592Y
F008327Metagenome / Metatranscriptome335Y

Sequences

Protein IDFamilyRBSSequence
Ga0120154_10415581F001935AGGVYTQRLSSLEFFTYAAFFAVVVVSIAAILPGRKAPVRTQPYSDDELKAHDRRLPKYFLTGGAFLLLGGIHMVLKNLPWTADWLARAGY
Ga0120154_10415582F000280AGAAGGMAQKPDEQPRPTPARPLVGYRDVGEDIRHGRSAITRAWIVLAILIVIYLAWTLTVYFLEPGLR*
Ga0120154_10415583F002111AGAAGMVATSILPFVTYSSMTETLIPAAEWPTVYSSLQALKGHVQEYPGCQGFDVFVRAEGDGDVLVHCYTTWDTAGQLEVFLERGYTFERLLADIGSGISAARSLVMEKVF*
Ga0120154_10415584F008327N/AGDTPEKVQDFYLYLQGHQETTHPVQTWHVDWMSLAWLWGFVLALVVVLLFWVRQYRTTRQRTGIYPVDSFGGWTTEGAGPATGFFLFFSAIVVAFAVALIVGHIVWGQKF*
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