NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0177922_11078055

Scaffold Ga0177922_11078055


Overview

Basic Information
Taxon OID3300013372 Open in IMG/M
Scaffold IDGa0177922_11078055 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1964
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.844722Long. (o)-79.573889Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F033645Metagenome / Metatranscriptome177Y
F037494Metagenome168N

Sequences

Protein IDFamilyRBSSequence
Ga0177922_110780551F033645N/ALWLTHPTARVQTNIVDFNAEKGFVLIQAQIYREYEDVNPSATDYAFGNVATYNVNMKKFFVEDTVTSAIGRAIGLLLGADKRPTRQDMEKVETISAKVANSTANDYDPWTTKFGDVPSFKTREEAEEAGMPTLGTSLDEIKEQLGGELIPESPQCSHGHRIFKTGEAKTGKAWGGWFCVEKTKATQCSPLWYVLTSSGKWSPQV*
Ga0177922_110780552F000403N/AMSDYIEIINPRLMTCKLMKSGELIAEYKVEQCDKCASIAKFDEFGYQKGFGNEKILWFCGGCR*
Ga0177922_110780553F037494GGTGGMKLKASIEDKVLAHTVALERIAQIDGQPDHGSRYDRRLGFHDYVAQVAESIVAEIMVARYLGYLNFDPRASQFKKTADVGSFIEVKWTRYENGQLIIYESDRSTDVAILVTGTSPSYRLAGWIPVAMAKRPKYKNSKQPTWWVDQKNLQPIENLKGSNYGQAAL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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