| Basic Information | |
|---|---|
| Taxon OID | 3300013122 Open in IMG/M |
| Scaffold ID | Ga0172374_1016322 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10.3m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3547 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (36.36%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Democratic Republic of the Congo: South-Kivu | |||||||
| Coordinates | Lat. (o) | -1.64 | Long. (o) | 29.05 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001272 | Metagenome / Metatranscriptome | 733 | Y |
| F002621 | Metagenome / Metatranscriptome | 542 | Y |
| F002843 | Metagenome / Metatranscriptome | 526 | Y |
| F038648 | Metagenome / Metatranscriptome | 165 | N |
| F083941 | Metagenome / Metatranscriptome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0172374_101632211 | F038648 | N/A | MESNDSGMPKFTLPEGVEIPENLKEGEAFQTMATIVLGAGGKAEVVEIDGIAIPGYENKSRGRKLAERGEEDEEVAPGGGGFIAEVMGRG* |
| Ga0172374_10163222 | F002621 | N/A | MSSTAKLRRIYGMIWLLALPIFPGCQMTKVVLVPSGDPVMLAKPIKASVYGFDKDKKLVGPSTVVLPAGWYVLPKE* |
| Ga0172374_10163224 | F083941 | AGTAG | MPPIDPHELEVRIVRLETTIGDKDSGLVSDIHGIKACVESLKQFQWKLFGGLAVIIVLAQMFVRILLK* |
| Ga0172374_10163225 | F001272 | GAG | MIKIELTEQQVNSLLQLIDIAIKAGGYQNAKVAVPLADIILDAANAQKTQ* |
| Ga0172374_10163226 | F002843 | N/A | MIDPTPTVQVQVNANNSLFVTTGVDYDNDGKVVGSEITEQYTLNPGDSLEGQPPEVVKIANALWTPAVVAAYQAAVEAAKPVVANDEPVAP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |