NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164320_10478511

Scaffold Ga0164320_10478511


Overview

Basic Information
Taxon OID3300013098 Open in IMG/M
Scaffold IDGa0164320_10478511 Open in IMG/M
Source Dataset NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay11, Core 4567-28, 0-3 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)630
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location NameMexico: Gulf of California
CoordinatesLat. (o)27.009Long. (o)-111.4081Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000782Metagenome894Y
F012880Metagenome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0164320_104785111F012880GGAGMKFNIITLIWSIALMLLTFQFCLLWIDWQFTNTLVYKFALLVNGFMFGM
Ga0164320_104785112F000782AGGMTKTEFKNTVKGIFSVRWLKNDGTEGYIHRGILGLNKKVDGQPLEHNDYVLVYKIGNGYGEQRRWGNVNPNTITQINGVAV*

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