NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164296_1037595

Scaffold Ga0164296_1037595


Overview

Basic Information
Taxon OID3300013093 Open in IMG/M
Scaffold IDGa0164296_1037595 Open in IMG/M
Source Dataset NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2532
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F026556Metagenome / Metatranscriptome197Y
F043403Metagenome / Metatranscriptome156Y
F070810Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0164296_10375952F070810AGGMQETDVLWELKIPWHNQDNKWWNEACADVIEVFGLPGERFTSHPYEDCMLFRFKSKKDYQLCKVLLSDKI*
Ga0164296_10375955F026556GGAGGMSLTSSVIKLLFGIALIIIALAIGPIIGIWALNTLFPEYLNIPLNWQTWLAFTVLFGGSVAGKFRK*
Ga0164296_10375957F009462AGGAGMELHESVKDTYTEQVIKEHSGFRLTLKKHEVLNPKGLFSIDMVQESLKDGEVTDSQTYNFFMTKDEMATLASALTA*
Ga0164296_10375958F043403N/ATTGTSVANPYDLVMVINQGDPPQLDVKGRMVINGRDLEERLETIEKVLQIPERDVILEAKHPKLKKMYDAYIKELSKYRMWEQIKGDDNGTT*
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