NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163199_1126452

Scaffold Ga0163199_1126452


Overview

Basic Information
Taxon OID3300013092 Open in IMG/M
Scaffold IDGa0163199_1126452 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_150m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1052
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)50.0621Long. (o)-124.7214Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030143Metagenome / Metatranscriptome186Y
F056343Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0163199_11264521F030143N/ALASQGHDLYSLIDGYPALMVKGLVAASQIRSRHRLMEQGVALTVAVTGGLDLALNQGKGKVLERWLKEMSGEGKSEPPEEKPKMSDRAFSFFTGMPRQGPDRPSREK*
Ga0163199_11264522F056343N/AAVKPWTIKQLLLVMPILDALVAEFKNQGVTLDNLGELFESQGLAAAKDIIQTILPRLPEFLAITLRIDREQAEELDLGLGMQLAVKVLRMNVDHLKNAFGLIMSQMGVLIGPEATP*
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