NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164294_10064722

Scaffold Ga0164294_10064722


Overview

Basic Information
Taxon OID3300013006 Open in IMG/M
Scaffold IDGa0164294_10064722 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2788
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026209Metagenome / Metatranscriptome198Y
F036073Metagenome / Metatranscriptome170Y
F088194Metagenome / Metatranscriptome109Y
F102437Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0164294_100647223F026209N/AMMNKQITNEYYYQKNGEGFTKTETVPAIGGIKWAQRESSGEYKQSAYYDHSFYKVPFHGPCDLGRIRNALSKLYPARFNKFGGFTTVADVQQLDAEHIKVELCYHIGD*
Ga0164294_100647224F102437AGGAGMTSKLRAFEDTVLSVREPRELKGSLVCSIQDSDIPMLDKRKLIIAIDRCMTINDIQRLFYNALLKFEGMGVIS*
Ga0164294_100647228F088194N/AMMNEIAATTEETTAYQLGTTISALMNLKRMVEQNMTDYGNCLEGVTGLHPMWGKQTLMREFDMAIDRLDGIRYPYKY*
Ga0164294_100647229F036073AGGAGMNETETMEPTKPYDADMHCRKIAWMGANGPDWDIENQTLDQYLETSPDYPTDEQVQGFDHMRLEPFVPFKKNKPYEGEQINEQV*
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