NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164294_10007393

Scaffold Ga0164294_10007393


Overview

Basic Information
Taxon OID3300013006 Open in IMG/M
Scaffold IDGa0164294_10007393 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9365
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (42.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005584Metagenome395Y
F006138Metagenome / Metatranscriptome380Y
F030060Metagenome186N

Sequences

Protein IDFamilyRBSSequence
Ga0164294_1000739310F005584N/AMIIDLWQSVTGLGSNAVSASVTDLAVSSELDVGGDVFRITQSAVVCASMISAPVIGSLCTVSGIERMIAGFSQSTDGLSYTIDLAEITT*
Ga0164294_1000739315F006138AGGAGMPATTIGQPGLVFGAITEGIGVIQSFSETRNIEKNEIRDRTGDIVGIAYYNATTGYSLSVAVTGAYNVTAGAALAALANATTAVGTGSLRIDSITINKSNDAFVTLDISATGYPNVS*
Ga0164294_100073937F030060N/AMIKGTITSEAPQIHWEHLNVAGGRVLDLGCAFWNQAEREEGNGTAKYFLSQKPEFYMGVDINQGDINTLSQQYPQGKFLCEKADSAFQMDSWITENSITHVKCDIEGDEAHLLQIGNVHNLKEIAIELHYSDRWLEEFKDWFKSIGFECYRYDSVSFCSEISVIYGRLKC*
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