NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164293_10542294

Scaffold Ga0164293_10542294


Overview

Basic Information
Taxon OID3300013004 Open in IMG/M
Scaffold IDGa0164293_10542294 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)762
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002413Metagenome / Metatranscriptome561Y
F025265Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0164293_105422941F002413N/AMSAPTLVLIAGYARAGKDTLASGILEWSQRPAEHINFADALKEAANHYMDYLGLDGNFFKEDFKVDNRDFLVHAGKFARRMDRDVFARHFANWCPVMKHHDQPSPETVVCSDWRYVNELRVCQDILWEKGWKVRTIYVATAGVGPANDEELDSIAEIR
Ga0164293_105422942F025265N/AYGKALAMLVGKFSGKYTNEIRLDATPAEYMQYLEPACGQTILVGVEVEANGEWQGKPQYKYKMTYPRGSQKPTAPEEPLPPEGVPF*
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