| Basic Information | |
|---|---|
| Taxon OID | 3300013004 Open in IMG/M |
| Scaffold ID | Ga0164293_10000337 Open in IMG/M |
| Source Dataset Name | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35991 |
| Total Scaffold Genes | 52 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (63.46%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.099 | Long. (o) | -89.405 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000220 | Metagenome / Metatranscriptome | 1544 | Y |
| F002997 | Metagenome / Metatranscriptome | 514 | Y |
| F006660 | Metagenome | 367 | Y |
| F021067 | Metagenome / Metatranscriptome | 220 | Y |
| F054875 | Metagenome | 139 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0164293_1000033718 | F002997 | GAGG | MGIARFENITINNLSFGKSSFGEQSTTITKWFETRARVRSVANSVRISDKYRVYSDIVEFTLNYTPNTKTIIDNQNAYSLTWKSFDWRVDSVRESDDRMTVKFLCVRNDPVVAV* |
| Ga0164293_1000033724 | F054875 | AGG | MTKFSSAFGEKYQTNKKNLLVRSFELGGHTFKVRIPLMAESDEIYTKVTNPNDETIEKIYQELTKPLMQFESNQTEEFKFVENDILVDGRSMREAAKNKAITEARITEFFKLLVPELENASLEDLTYQDIEDEFPMSVQLQIVEKIGEAISPTYKESRGN* |
| Ga0164293_1000033727 | F006660 | GGAG | MSLQTIFDIQQSMTVNNRRTVGQQVSRSGQVRVAQYLTSVPWVFTVTPHNYLYYPQVRNVIQAIDNKDRQLPESISFASTNLSWFVAYQGDLTTGQVNALTLASAPAANATTISVGNLPSVSSSAYVFKAGDFLQLGLYPYKVTENVLRGSGSTVNVTLHRPVISTPSVGTLTAVGSACTFYMLAETCPTYTLNPMTNGAFVQWDAPFVFREDITG* |
| Ga0164293_1000033737 | F021067 | GAGG | MALKISIPTSNVGVPFTDAYARITNIFGNKDQVQYQVSVSANADARQANAQEVAQHAFYCPTPQGNLMDGLYADLKQQVGFENAQDC* |
| Ga0164293_1000033741 | F000220 | GGA | MSEDKTNDILSKVLSYVDSPFKLFALILMAVFTFAGYFVWQNQAFLFEAYKENKKLPTIVEDRAEDVAAHLFKNSDAAIVAIFKVNPLFGTRVLFRAYTREGRDRTHEGLDVGLFTQSSANNRDVVALMANEIPCSEYTVAQSEIGLWYIEKGVTFGCRVSVPPEQGRFVGQITVGWEKEPKDLHKAMGMLQIASTMLARAKQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |