Scaffold Ga0163179

Basic Information
Taxon OID	3300012953 Open in IMG/M
Scaffold ID	Ga0163179_10002928 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012953 Open in IMG/M

Scaffold ID

Ga0163179_10002928 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11721
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (80.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

11721

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (80.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	North Atlantic Ocean
Coordinates	Lat. (^o)	34.876	Long. (^o)	-13.1352	Alt. (m)	Depth (m)	80
Location on Map

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Source Dataset Sampling Location

Location Name

North Atlantic Ocean

Coordinates

Lat. (^o)

34.876

Long. (^o)

-13.1352

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F018286	Metagenome	236	Y
F030886	Metagenome	184	Y
F053549	Metagenome	141	Y
F057352	Metagenome	136	Y
F067640	Metagenome	125	Y
F074757	Metagenome	119	Y
F086310	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_1000292815	F030886	AGGA	MGYHDRKPPDYHKTGIGVVNPLIRIEQKIKKVREILDNISDDSVLTANDLKTKIQTVLND
Ga0163179_1000292817	F018286	GGAG	MNMLKTFVLLGVIDSHDSYFATVELNTNPASNGGSATAVMPVNAFPCEIYEGKVFYVVKLHENQDAVIVCQEDVKSERQREETD*
Ga0163179_1000292819	F053549	GGAG	VGDLVKWENVLNDSMDHHRQDHGIVIKMSRTGHDSESAQVLFTDGDLWWLDTQKLVVVNEAG*
Ga0163179_1000292823	F067640	AGGAGG	MIEVGSLLKNRFNDSLWLALDEIAESVLIINQKTNYKMWAEKTHFEVIG*
Ga0163179_1000292825	F057352	AGGAG	MKLWVLHGTYESELFSSIHLTEKGCALAAIADIMDFLGVTNEEDALQVINDCYAYTGTDGKQTEAFEWDHDKLKEMSSKDLWKIFSDWTETCWERMSDRSYYIDATPQMVQA*
Ga0163179_1000292828	F074757	GGAG	MKAGDLVTLSSYCLQSAPMYVWREKIWMQKKPLVGLVTRVAPNPRIFPFTSANERTHYYIRWIQDGPGSRYGRSFHKLDGYFLRNDLKFVKKGDFK*
Ga0163179_1000292832	F004771	N/A	MKRRVRIGDLVTMYTHDTGLIGVVLDRKPKAISTTPAQIGIKWFNGANSFEWEPEGWLEVVSEGR*
Ga0163179_1000292844	F086310	GGAGG	VQVGDIVKHFLTEQIGVVLTVVIAKPRRSIGSVHVMWTTQGQSLFGPGTKEWCDERSLTVLTTA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0163179_10002928

Overview

Ecosystem & Geography

Associated Families

Sequences