NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163108_10321282

Scaffold Ga0163108_10321282


Overview

Basic Information
Taxon OID3300012950 Open in IMG/M
Scaffold IDGa0163108_10321282 Open in IMG/M
Source Dataset NameMarine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)997
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location NameThe Central Pacific Ocean
CoordinatesLat. (o)10.0Long. (o)-145.0Alt. (m)Depth (m)155
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F013820Metagenome / Metatranscriptome268Y
F022754Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0163108_103212821F013820N/ARRIKMIATIISFIDKAIPGQKTYALMILGVGMTVCQMWGFHSFSQEAWGLLGIGGAATWKMGADRGKPAVKK*
Ga0163108_103212822F022754GAGMLIIPSPHKLIDWSVNEIPTQIQIIHKSGLEVSYTATPVSCKFQPRHDREMVFRSPNNRCYSVYDLSSPRFVRHPDHWYKVELPEPPLVNLGE*
Ga0163108_103212823F002078AGGAGMDIAAMFEGQGWFAIAGQIVLVFTAITGSLPDRFVQKIPILGTVWPIFNWLAGNVFNNINHPKGMAAQNEVEKEIDAAKAKVRDRSGMPDVLDGM*
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