NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137359_10216696

Scaffold Ga0137359_10216696


Overview

Basic Information
Taxon OID3300012923 Open in IMG/M
Scaffold IDGa0137359_10216696 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1710
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002492Metagenome / Metatranscriptome554Y
F016467Metagenome / Metatranscriptome247Y
F053513Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0137359_102166962F002492N/ALYQAALFETDHDKIPQRIAEAESAILFRIRELFAVTSDHIEEDVVLDDALYALRALRTCVLPDATAA*
Ga0137359_102166963F016467GAGMMSKNAETTQVPAENLKRAFECAVNDIYQAGLTGKVSPYRTPIVQRAGTAMAASSFDAKKRAVSDAAKALAQLWKVSPNSSR*
Ga0137359_102166964F053513N/ADAASAPTERAVPAGTDSVVISNSAVGIGGRWDTFQSRLRERRKEAVARCNTCTGESATKRGSESVDTLRKAV*
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