| Basic Information | |
|---|---|
| Taxon OID | 3300012766 Open in IMG/M |
| Scaffold ID | Ga0138282_1181673 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada - M_140807_M_mt (Metagenome Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1287 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Quebec | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001345 | Metagenome / Metatranscriptome | 718 | N |
| F005845 | Metagenome / Metatranscriptome | 388 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0138282_11816731 | F005845 | N/A | MKTTPTDFRRWQLHIRKERVNCNRPDKSETIKAWSVNWTLLGRILQAKNA* |
| Ga0138282_11816733 | F001345 | N/A | VNAESIVLDLYRSGEIRKACLTITGGNPLWKDLEQEVVLILLEKDPDKITKMQDQGYLRFYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETQELSKDYDSLLDDLWAIAQQEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKNKIKT |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |