NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136614_10171027

Scaffold Ga0136614_10171027


Overview

Basic Information
Taxon OID3300012684 Open in IMG/M
Scaffold IDGa0136614_10171027 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1643
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0526Long. (o)163.748Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049665Metagenome146Y
F083213Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0136614_101710272F049665AGCAGGMSLKLKAIYKDGAFVPVSNGEKLNVSENAEVEITVHDPYVLPPTATNEEERERALRELFASWDAHPLRSDAPRLTRDEMHERR*
Ga0136614_101710273F083213GGAGMREIETETESFKRRDQAAAQARAEILRRAQGQATLATTFADLLGDGGPSDETADEMTRAIREWRDTPLKIR*

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