NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157498_1006595

Scaffold Ga0157498_1006595


Overview

Basic Information
Taxon OID3300012666 Open in IMG/M
Scaffold IDGa0157498_1006595 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1890
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.6244481Long. (o)-80.9227115Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F001897Metagenome / Metatranscriptome620Y

Sequences

Protein IDFamilyRBSSequence
Ga0157498_10065955F001897AGGCGGMAFMDSYEGNKERTDRWIATYPQGRLETHIIEFNAEKGYVLVQAKAWRNQTEIDPAGIDYAHGFLAAYSDKMRRWMVEDTCTSALMRVMALVMGGTEKATKEVMASVKTETPAADHDYWTTKFGDVPSYKTREEAEEADETGWAVNGVPMCAHGSMRWNQSKPDAPKPWAGYFCNEKAKEKQCKPSWYVLTSDGTFKPQV*
Ga0157498_10065957F000403GGTGGMSDFVEIINSRTMTCKLMENGEIVAEYKVEQCDKCSRLVKFDEFGYQTGYDRTEKVIWFCGDCR*
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Institute for Fundamental Biomedical Research
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