NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157210_1002835

Scaffold Ga0157210_1002835


Overview

Basic Information
Taxon OID3300012665 Open in IMG/M
Scaffold IDGa0157210_1002835 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4248
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameDouro-Dummer, Ontario
CoordinatesLat. (o)44.4982Long. (o)-79.1546Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002653Metagenome539Y
F021263Metagenome219Y
F023041Metagenome211Y
F097207Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0157210_100283510F023041N/APYDTGKVKIGLLYTEPPPETTPESDWIQGVLLGDKQGMDELALVTIQTIGLIAFIIIGIFLIGGNTNA*
Ga0157210_10028352F002653N/AMTEEELERRVEAMSDEEQHHFRLLIHKIVMCYGEGKAQGVFIIGRAEDNVAGVVTLNCNEMEASQLMLAANDFFGFLXXXXX
Ga0157210_10028358F021263GGGGGMDEQTREMDLQLGELLRENKRLKAIEQAALAVMKAFGNSIDYNTWDRALDTLEATLKEKV
Ga0157210_10028359F097207AGGAGGMPDMQTALSNALKTTINDWEKDDMQTTQTNTQANVHHKGKRFFDVTNNVTRATFDYVKKNPNLTSAEICADMEKLGYKESSVGSLIAQFAKQGLAERDDRGRYIIIVPEYRPLKAKKKLLKIVPKPVEVPKRKYEKKAVTGIGALLREKLMDMPEPSKEALDAAMRAMEPAPENNKRFTSLVRTKTPDDILKDMTVFQARELYDYLKKMFGG*
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Institute for Fundamental Biomedical Research
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