| Basic Information | |
|---|---|
| Taxon OID | 3300012665 Open in IMG/M |
| Scaffold ID | Ga0157210_1000123 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 40428 |
| Total Scaffold Genes | 61 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (83.61%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Douro-Dummer, Ontario | |||||||
| Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001599 | Metagenome / Metatranscriptome | 665 | Y |
| F001706 | Metagenome / Metatranscriptome | 648 | Y |
| F019798 | Metagenome / Metatranscriptome | 227 | N |
| F025224 | Metagenome / Metatranscriptome | 202 | Y |
| F028490 | Metagenome / Metatranscriptome | 191 | Y |
| F098904 | Metagenome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157210_100012311 | F025224 | N/A | MADATWMPGSLFDNIDKFANSLGYENAAVAIEFAMMPWKSPEERDTFITGITGQDPQGGTEKNYIKRNF* |
| Ga0157210_100012312 | F028490 | AGGAGG | MVSGGMRPGAPQNNPANVSGTGGAGQSGDYTGFAYGQNQEVNQQRVQGNQAVASTKTPTASANPYEGINMPQLGTLFDPTTRPDEPITAGVDFGPGPGSEVLPRGLMNSTANDENAKIVAQYLPDLAFAARSADAPDSFKRFVNYLIENNRSVI* |
| Ga0157210_100012313 | F019798 | AGG | MTTLVAIQGDGWSVLGCDSRLSDEHGRFQIAKTPKIVDNNGVLIAGCGSSRASNVLHYGYKQPKPTAQEDLNTYMTQKFIPAMRKSFVDAGIDMKEDGDVAQIDGGFLISVKGQVFSVSEDYSWDTDVRNVYVMGSGGDVALGALAALGVEKVKTINQAEAMVRKAIAIAIQYDNMCSEPIHIFKQFK* |
| Ga0157210_10001234 | F001706 | AGGAG | MGLHQIQTHAQYVEGCFGCKASTLELGTGDATRDISDKKWNSELQAYRDAKAQGIQPGGTSRAHVEAAYAASVTLGKAYNSETMPKAHQINKKTAEVMKEIGQV* |
| Ga0157210_100012347 | F098904 | AGGAG | MSNFFETFAASLLGIGAFYLVEAVYYDIKARIRGKQYTLFLEELEEELEH* |
| Ga0157210_100012360 | F001599 | AGGTGG | MAQETVSIAWCDNGMVDGKFMQGVTDVMLKSGINFTSTLRSQGNQIARQREKIIRYWYENNTSEWLLWVDSDVVISPEKFRLLWDNKDAAERPILTGVYFTTDTPEEPLMIPMPTIFNFAEAEDGVVGIKRVHPMPENQLIKVEAAGMGFVLMHRSVIDKIIEAVGNEIAIFNEIGTGKSFMGEDIYFFALVGKADIPVYCHTGAVVPHMKRFSFDEHYYKAFFGGVKEEKKSNLILPKQGLITPKKG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |