NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157140_10000027

Scaffold Ga0157140_10000027


Overview

Basic Information
Taxon OID3300012348 Open in IMG/M
Scaffold IDGa0157140_10000027 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34491
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameColdwater, Ontario
CoordinatesLat. (o)44.58751Long. (o)-79.6655Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013504Metagenome270Y
F019820Metagenome / Metatranscriptome227Y
F042654Metagenome158Y
F079806Metagenome115Y
F095364Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0157140_1000002711F079806N/AVTIRGIKMSGTATLTYDLSKPEQVMAHKYALKGLEACQMLESLKAATAGYQAYKGLSESVLADIIADLSKWEDVKL*
Ga0157140_1000002718F095364GAGMIDRSDKLKSQIMLNIGENSFTLLHSDDLDLLEVYLVLSAALDYIEDEAEAISRREGSYLQ*
Ga0157140_1000002719F019820AGGAMSADLKAVKINGELFWSKWMAEFNKAFNTDNDRYECTIGNISDDDAAKLTGLGIKVKHKDAMGNFIVAKSKYLFKPTDDKLQEVPIEALGNGSKCVAIVGSYTHRMSAKHGNAPSLKTIMVTEVKTYVPETTTGEDDDTL*
Ga0157140_1000002753F013504AGGAGMALKITAINNTNGQSETQAYARITNFFGTKDQIQVQVEVHATEAARQQGWPSVAQHAHYINMEDLSGNLIPAIYTVLKTLTVYQGAEDV*
Ga0157140_100000276F042654GGAGGMLNNNDFIALERRLWREGNPLCDELVSTRDELLHLLSVSKKILQKYSPVINELSSVDDLEFFREWDNFGDTLDNISYDLGIEQ*
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