NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157141_1000098

Scaffold Ga0157141_1000098


Overview

Basic Information
Taxon OID3300012346 Open in IMG/M
Scaffold IDGa0157141_1000098 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Emily Creek, Ontario, Canada - S29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37163
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (81.03%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKawartha Lake, Ontario
CoordinatesLat. (o)44.46181Long. (o)-78.6228Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000961Metagenome / Metatranscriptome820Y
F009393Metagenome / Metatranscriptome318Y
F058801Metagenome134Y
F067676Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0157141_100009837F067676AGGAGMTKEQALAAIKLLSAMESWAFSQPAASLPDYLHEDLCKSMDVLEAIILEKKP*
Ga0157141_100009841F058801AGGAGMKNYTTPRNYADCTWVQGYGRKEPLLKRLAPYALAFLIGVGMAALLVAWWSS*
Ga0157141_100009852F000961AGGMETADMAEIDPVKYGVLWERVQNYERRFDEMSSKMDKMEANVEKLVALANQGRGGFWAGMAFVSFVSSAIGFGFSWLKGH*
Ga0157141_100009853F009393AGGMATGSQIPFNPQGKTVVIAATTTAPTGLQAPVDTKYTPQATGQYRIVNSGTVAVFLGFGSTAADAAANAVAPVAGTPSNALALLPGAIEVLRFTPNTFFSGLAASATSVYITPGEGL*
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