NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157141_1000036

Scaffold Ga0157141_1000036


Overview

Basic Information
Taxon OID3300012346 Open in IMG/M
Scaffold IDGa0157141_1000036 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Emily Creek, Ontario, Canada - S29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)66338
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (14.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKawartha Lake, Ontario
CoordinatesLat. (o)44.46181Long. (o)-78.6228Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019105Metagenome231Y
F030696Metagenome184Y
F070887Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0157141_100003662F030696N/AMKKIALIIISMHLLLSCSLHYHLEKAMKKGYRCDDVSDTIKITSVDSVPVIVHDSIVWEKFFVTKDTIIKYKTSYIPKTRWQTRIEYKLKRDTIRQIQKIEVAKHKSQKKGNGNLGNLWLLFFIGFAVSTIIHYLFKFSKFNL*
Ga0157141_100003666F070887N/ALSFSQSRYPLQTIIDGDSVVILTKAQADTINSIFENQKTKIANFKQEAKVKDSIISLRDTLLVYYAQRYTEYKTIIETQIVREDKFDTIRGWLINRAKEGSWIYYSYLNNEIVAVDLSDYVVRKDDYTGDIMFYKRTEDCPNDNKQKEPPVGWHYDVVKPKRPKLNIFKL*
Ga0157141_100003667F019105GAGMKRKLLIVGSLFITLVVIQVFSSGHGHVVVVEDNIHLTGENKKLTTENKKLTNSVSKLEAEKEDLIEDKVSLENMVSEVIGDLDSTKSVVKDIKNELKNEKDIVRKQSSGKQFEFQPITLPTSDDN*
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