Scaffold Ga0136560_1020969

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136560_1020969

Scaffold Ga0136560_1020969

Overview

Basic Information
Taxon OID	3300012269 Open in IMG/M
Scaffold ID	Ga0136560_1020969 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #497
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1836
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Rauer Islands
Coordinates	Lat. (^o)	-68.5558	Long. (^o)	78.1913	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029560	Metagenome	188	Y
F032039	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136560_10209691	F032039	N/A	IINYSDVDKLDENEKNHLYNIGKKLHITELFEIPSTLKNQEEKLKDEFYKLRGSIMAGNNSPEILKKFKMILIKMKNNKMISLSEFNEILNIFLEMDY*
Ga0136560_10209694	F029560	N/A	MNNFYKITGNGLKVNEIKNFIQSSYLEEAPKNLLGYVLDENLSNLYGKVYVNEELKKVILSFRGTGMENLGSDWVNNILFLANSSSYKLTPRFQTALKMYRESMKKYINYKFELLGHSQAGVIVNNLCSNNVSNCISLNPAYKN

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