| Basic Information | |
|---|---|
| Taxon OID | 3300012212 Open in IMG/M |
| Scaffold ID | Ga0150985_111962272 Open in IMG/M |
| Source Dataset Name | Combined assembly of Hopland grassland soil |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1708 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Hopland, California, USA | |||||||
| Coordinates | Lat. (o) | 38.972988 | Long. (o) | -123.116539 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021762 | Metagenome / Metatranscriptome | 217 | Y |
| F099383 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0150985_1119622721 | F021762 | AGGAG | MYEKPVVKRFGSLRELTAGMGPNLGGDAQSVYHRS* |
| Ga0150985_1119622722 | F099383 | GGAG | MIDRAHQDVNLEADVVLTGLVPQLTTPSRDHGDLVDIWFGLQWRERDAEWAEAFARLAKAWRSDAHGPSCFDLFSYAANCGLIVARRVSAEVGAWGQVEEQARILVGRVNRDMRERRRTPSAPDGTSRGWTLRVRGASSGLLASLRWMSEPKHALPSVVPELPIQLPRSSPTTSP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |