NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137382_10156348

Scaffold Ga0137382_10156348


Overview

Basic Information
Taxon OID3300012200 Open in IMG/M
Scaffold IDGa0137382_10156348 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1548
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F002111Metagenome / Metatranscriptome592Y
F008327Metagenome / Metatranscriptome335Y

Sequences

Protein IDFamilyRBSSequence
Ga0137382_101563481F000280AGAAGGMGGERRRPRPARPLFGYRDVGGGDVRHSRSAMTRAWIILAILIVFYLAWTLIVYF
Ga0137382_101563482F002111AGAAGMSTLPTIQAAPPFVSYSTLSEAVIPADQWQRLYASLQALKGHVQEYPGCQRFDVFVRIEDSGATLVHCYTTWDTPAQLEVFLERGYTFERLLADIGEGLEVRRTLVMEKVF*
Ga0137382_101563483F008327AGGAGMFPKGDTPQKAQDFYEYLQGHHETEHRVATWTVDWMSLAWMWGFVFVLVLVLLLWVMQYRTTRQRTGIYPVDRFGGWTSEAAGPATFFFLVFTAMIVAFAVAIIVGHIVYGQKF*
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