NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153974_1074968

Scaffold Ga0153974_1074968


Overview

Basic Information
Taxon OID3300012180 Open in IMG/M
Scaffold IDGa0153974_1074968 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)754
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Georgia, Yuchi Wildlife Management Area
CoordinatesLat. (o)33.0837Long. (o)-81.7708Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026344Metagenome / Metatranscriptome198N
F033415Metagenome / Metatranscriptome177N

Sequences

Protein IDFamilyRBSSequence
Ga0153974_10749681F026344N/APERLLREFATLLSEDTIIGQRVVKLLMATTTKAKFLVSLATAPDHSSHRLTFDGRGVYSGFSLACFLPPRTVMIDLHPTAVGQHARLLYAACKAMPNVVERRDFRWDR*
Ga0153974_10749682F033415N/AFPLEDDDPANMNGALREETADTKAFLSVLASFSELNGKKIFVMGPARFVSALSRETLPANVFPLPVDLNDGGWYTLDLHPNKQGHREIAAQILGELKRTEEGRQCLAGEP*
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