NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153805_1020141

Scaffold Ga0153805_1020141


Overview

Basic Information
Taxon OID3300012013 Open in IMG/M
Scaffold IDGa0153805_1020141 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface Ice
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1137
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.844722Long. (o)-79.573889Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002387Metagenome / Metatranscriptome565Y
F007468Metagenome / Metatranscriptome350Y
F033037Metagenome / Metatranscriptome178Y
F050227Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0153805_10201411F050227N/AEYDNQCRDCDSYNTLDYCEDECGEICSSCNYLGEADLEAVKECQTHKIYLDSEHVPTYRMDKING*
Ga0153805_10201412F002387GGAMASFLEDVNQMVIDACYQDIAEQLLDDWINSNLDEGQYYADKQFAEMSGDKFIQDEFNKFYNLKEGDEDYLC*
Ga0153805_10201414F007468GGAGGLTTQTKSSKFIEYMKIHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVALDIMATSERYNNE*
Ga0153805_10201416F033037GGAGMKPQDKDKLNECLKILDTTDLGLSLVWLWTWSTINNIFE
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