NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137393_10384102

Scaffold Ga0137393_10384102


Overview

Basic Information
Taxon OID3300011271 Open in IMG/M
Scaffold IDGa0137393_10384102 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1202
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000217Metagenome / Metatranscriptome1557Y
F000440Metagenome / Metatranscriptome1137Y
F001138Metagenome / Metatranscriptome767Y

Sequences

Protein IDFamilyRBSSequence
Ga0137393_103841021F000440AGGVRGDRLAMGKQTKCTPAQRAAEYVKRVAALTGAEQVCGDSYWLRAGRREFLVDNKFVRVISHHGKSTRFSVAADPDMPSAEVVASALLQLKNNPRLFKKWRKRPGYALKANGKMFRGADWSA
Ga0137393_103841022F001138GAGGMMSTTLSLIAFFALIAWRFVFAGLHRGPLFRAIAPQQQRHNNVLEEGLDISDPGGVAAIEGNRFENSSNGLDPLDRKDRAKTYLRRIVALTGATPMDDAYVLDVGKTRFHVRYRYVDRLRDATDPECAYEETCFYPVHKGMPKAEEIATALLQLTNNPALFDKWAVQNGLAFKADGQVFRRAR*
Ga0137393_103841023F000217N/ADTTLLEYDPATADMEEVNKVIAEYEAKTGAQPFDMATGERLEKVTREQNEVLMVHPIAGG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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