NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136587_1000202

Scaffold Ga0136587_1000202


Overview

Basic Information
Taxon OID3300011188 Open in IMG/M
Scaffold IDGa0136587_1000202 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #563
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16487
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000656Metagenome956Y
F004320Metagenome443Y
F018128Metagenome236Y
F046845Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0136587_100020210F000656GGAGGMQMPHNGFDSLAAVARLNTDDTSHHRERWPTLAWVWDELDELRHWQDEAIDAEDYAALEAERDALSDVAEQRDALSQAVRLLLGPEPDMERVQAVLAGGRA*
Ga0136587_100020213F004320GAGMSPEGRREVILRAAVALTQDAGCIDSWSRQDVANKCVPPTSPETVKHYFLMPDLRDAVRVLLDK*
Ga0136587_10002024F046845AGGAGMTKEQYADLNATIFDFQKKIMLHDIASMDPEVRATMEAVEAQLDALRTGKLFELR*
Ga0136587_10002029F018128GGCGGVTDNAEQAARMRALWSAVVLTSINDAIHHAAREPENQKGRALKTLALWANSRNGREVLDLAGINPDNRVTDGMLAFAAKGVPVTQPRKRGTNL*
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