NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138513_100012719

Scaffold Ga0138513_100012719


Overview

Basic Information
Taxon OID3300011000 Open in IMG/M
Scaffold IDGa0138513_100012719 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterShell Corporation
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1077
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location NameRanch near Red Deer, Alberta, Canada
CoordinatesLat. (o)52.172047Long. (o)-113.738964Alt. (m)Depth (m).15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F001935Metagenome / Metatranscriptome615Y
F002111Metagenome / Metatranscriptome592Y

Sequences

Protein IDFamilyRBSSequence
Ga0138513_1000127191F001935N/AVAVVLAAVWRLVPGKALPVRTQPYSDDELGSHDQKLAKYFVAGGGFLVLGSLHMLAKNLPWTAEWLARAGYAGHLVRDLSNTHVM
Ga0138513_1000127192F000280GGAGMAGRRLRPARPLFGYRDVGEDVRWSRRAIQRSWLILALMVVLWLGWTLTVYFIEPGLR*
Ga0138513_1000127193F002111AGAAGMAAAPPFVAYSSLTEVLVAASDWEDLYGSLQALKGHVQEYPGCQRFDVFVRVEGDGDVRIHCYTTWDTPGQLEAFLERGYTFERLLADFGTRDAELSLVMEKIF*
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