Scaffold Ga0137784_1219371

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137784_1219371

Scaffold Ga0137784_1219371

Overview

Basic Information
Taxon OID	3300010936 Open in IMG/M
Scaffold ID	Ga0137784_1219371 Open in IMG/M
Source Dataset Name	Marine microbial communities from surface seawater of North Pacific Subtropical Gyre ? Stn. ALOHA, 15m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1336
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Surface Seawater Of North Pacific Subtropical Gyre - Stn. Aloha, 15M

Source Dataset Sampling Location
Location Name	North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001504	Metagenome / Metatranscriptome	681	Y
F007173	Metagenome / Metatranscriptome	356	Y
F028529	Metagenome / Metatranscriptome	191	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137784_12193711	F001504	GGAG	MTQNTEHFYAVQSFLEDDELCKIWNIIEIAMEREGYDVQNAELSMRLYDSELTENKGYYNQPEPINYYQGA*
Ga0137784_12193712	F007173	GAG	MQTTTTKAIISRDNLMQYIHEDRDLLMGLQDDLSDMLSATGKFSITLDEIVQNFMPFFPLYLIENEDEIRQAFPDRVDDDHIFIYDRGMTPNEITLNVEWLD*
Ga0137784_12193715	F028529	GGGGG	MRLSKFLTENLDTKTVNLTLTFDERSELLRHFEMYDEHIDQLHPLVESVQDKLLGID*

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