NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0133913_13078768

Scaffold Ga0133913_13078768


Overview

Basic Information
Taxon OID3300010885 Open in IMG/M
Scaffold IDGa0133913_13078768 Open in IMG/M
Source Dataset Namenorthern Canada Lakes Co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1108
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001562Metagenome / Metatranscriptome670Y
F043387Metagenome / Metatranscriptome156Y
F057310Metagenome / Metatranscriptome136Y
F063685Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0133913_130787682F057310AGGAGMKITYTIWQGSLNKGRLTASKMSEVIDTIKELNTLGDKLKFEALVHTVEESN*
Ga0133913_130787683F043387AGGAGMMTKWDTIQADIADAYRHFDEAEALDKHNSETLFDEDMISMDEVIEKGLTLDWEDSE*
Ga0133913_130787684F063685GGAGGMTIEIDTYGFMLDTEWAYVAISWQLLITTALLVVAYKVYKWKRGK*
Ga0133913_130787685F001562N/AMKSQFEKDLELKESFCDLLNEIYPNVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLKETEN*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.