| Basic Information | |
|---|---|
| Taxon OID | 3300010885 Open in IMG/M |
| Scaffold ID | Ga0133913_10274601 Open in IMG/M |
| Source Dataset Name | northern Canada Lakes Co-assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4471 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (64.29%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005737 | Metagenome | 391 | Y |
| F022157 | Metagenome | 215 | Y |
| F062385 | Metagenome / Metatranscriptome | 130 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0133913_1027460111 | F062385 | AGGA | MGYQAKNIPNATSSDMTGEKKVSVPKMDRTVGTKSMTGATPPKGATSSDSSGERKRPIEGGVGMGKMDGIGSRDAKHMGMHDGRMGEMKGGSSEASCYDHKRMSHVQD* |
| Ga0133913_102746012 | F005737 | AGGA | MFEIEKYTKPTDWTQVALWIVSITALVVVTLDIFVWRA* |
| Ga0133913_102746019 | F022157 | GGAGG | MWDVAVTFMLMMFGAFVVIAFGAILIWVLYLLQNED* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |