Scaffold Ga0133913

Basic Information
Taxon OID	3300010885 Open in IMG/M
Scaffold ID	Ga0133913_10189886 Open in IMG/M
Source Dataset Name	northern Canada Lakes Co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010885 Open in IMG/M

Scaffold ID

Ga0133913_10189886 Open in IMG/M

Source Dataset Name

northern Canada Lakes Co-assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5479
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5479

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (73.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000903	Metagenome / Metatranscriptome	843	Y
F001586	Metagenome / Metatranscriptome	667	Y
F001897	Metagenome / Metatranscriptome	620	Y
F003182	Metagenome / Metatranscriptome	502	Y
F032155	Metagenome / Metatranscriptome	180	Y
F058101	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_101898861	F001586	N/A	SQNETDASDIASIGLYGQLSQIFTTTLRHLHDAEDQADFYLALRAYPRFNFNNITYELTNPELDDADRDDLINVFMGMPVQISDLPLNMNSGDYLGFVEGWTFSARYNQISISMILSPISFSLQAMRWNDVPVVERWNTVNPTLDWINATIVA*
Ga0133913_1018988610	F000903	N/A	MMDRIEEVQCMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMAAEYVVAKKLGYDYTPGITWDKSKADVGDHIEVKWSANPASNLWIQESDRHDRDIAVLVTGSSPKMHIVGWMPVAIAKKPRYRNASQNNWSVPQINLQPIETLQRSNYAHPAI*
Ga0133913_1018988611	F003182	AGGAG	MHILQFDCSICAKLYGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIVELSQ
Ga0133913_1018988612	F058101	GAG	MTINPKDIHIATDGKIYSFSGFGGFMNCSICDNDCMVNEYDRQDDGAVMWFCKPCEDRLHL*
Ga0133913_101898866	F032155	AGG	VSPGEWTAVGGFVIAILTAVYSSMRIIIRSVMSELAPNSGSSMKDQVSRIEARLDYLYTQLIEQKK*
Ga0133913_101898868	F001897	GGA	MAAFMDGYEGNKERTDRWVATFPQGRLEAHIIEFNAEKGYVLMQAKAWRNQTEIDPAGIDYAYGYLAAYPDKMKRWMIEDTTTSALMRVMALVMGNTEKATKEVMAAIKTPAADYDYWTTKHGDVPSYKTSAEAEQSGTPSFGSSDDSKSPTEFVPICSHGVMRWNQSKPDAIKAWAGYFCSEKVKEKQCRPNWYVMTSDGTWKPQV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0133913_10189886

Overview

Ecosystem & Geography

Associated Families

Sequences