NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133547_11827040

Scaffold Ga0133547_11827040


Overview

Basic Information
Taxon OID3300010883 Open in IMG/M
Scaffold IDGa0133547_11827040 Open in IMG/M
Source Dataset Namewestern Arctic Ocean co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1122
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)190
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069362Metagenome124N
F078924Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0133547_118270401F078924GGAMGANALYSMSNCRVGQAGEVEKRKGFSKFNSSALNSGATITAVGQVTLAGVEKTFAISGNKFFDITGGSGTDRTGSATITAGNDNVWEWVLAGASLVLTNGVDTDAVTWTGGTNNIAALDDDSRFTKGAHIAYWDNRLWIGNVDGAKYQLWRSNTGDITTWGSTD
Ga0133547_118270402F069362N/ASFTCVNNQRSYSLAADVAEPLSFRNHTQDHVLVIWSSQDLDANDPDHSETGDPRYVSIDGINSSTGYVSVALYPKPDNGTDVIKYRYYGYIPDFDSGDDSSSLDTYVHPLLQPALVFGVSALYKQEKGDDQGSMVDKAEMERIIQRGLLQNTTVQGNRSYRMRRRDGTGGGAFDFKPLEGSLS*
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