NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134124_10052308

Scaffold Ga0134124_10052308


Overview

Basic Information
Taxon OID3300010397 Open in IMG/M
Scaffold IDGa0134124_10052308 Open in IMG/M
Source Dataset NameTerrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3438
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Kellog Biological Station, Michigan
CoordinatesLat. (o)42.3938Long. (o)-85.3708Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000719Metagenome923Y
F004395Metagenome440Y

Sequences

Protein IDFamilyRBSSequence
Ga0134124_100523082F000719GAGGMKAIATKLLVVAIIFTSANGAPTKGDDFNSVVKMIEQFYRVKHVGLPFLAKAGMKIGTTAARIKGGQARRIAEAGSIKLAVFEDQGFNGDLAKFRASLNEALNATWMPLIQTLSPQDQEQVYIFLRDAGEKINVLVITIEQRDATVVQVTLSPKNLALLLKDPEGTGKSITQEATINDQE
Ga0134124_100523083F004395AGGAGMYRHRFPLFLLFILATFASLPIHAQEVEDTIKIKTRVVFLDALVKDKKTNLPISNLTTENFQVLDDGKPRNISYFTREGQARKPLALILILDLREDGAGRFLKRTEILKSMEDELAKLPPGDEVAIMAMDMNNEDEERLWLTEFTNDRAKLAAALARVPAMCEPHEGHPPETKSTEAAKADNSAGKPDDVVETETIRGRNGGTVIRETHRDGSVNVKRTNKKGDVTIELGDVYDMAAAVKDASRKAEATRPNSQLSIVWVSDGIVPIFFEDRDATEQILIRNNVIFNSLTVELRTLFKFLLPVGKPIAGWLGMSLYGSAKYLAQQSGGEAVKVGRPKDYGAGLSRIIGNLTARYSLGFALAEDEIDDGRMHSLEVRVKAPDEKGKTRKLQVSSRQGYYMSSTIPKDAAAKAQF*
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