| Basic Information | |
|---|---|
| Taxon OID | 3300010388 Open in IMG/M |
| Scaffold ID | Ga0136551_1000359 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13364 |
| Total Scaffold Genes | 39 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (87.18%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Jussy, Geneva, SWITZERLAND | |||||||
| Coordinates | Lat. (o) | 46.25 | Long. (o) | 6.28 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F000447 | Metagenome / Metatranscriptome | 1128 | Y |
| F000450 | Metagenome / Metatranscriptome | 1126 | Y |
| F001019 | Metagenome / Metatranscriptome | 804 | Y |
| F003663 | Metagenome / Metatranscriptome | 474 | Y |
| F004666 | Metagenome / Metatranscriptome | 428 | Y |
| F014250 | Metagenome / Metatranscriptome | 264 | Y |
| F015208 | Metagenome / Metatranscriptome | 256 | Y |
| F038241 | Metagenome / Metatranscriptome | 166 | Y |
| F084151 | Metagenome / Metatranscriptome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0136551_100035910 | F038241 | GGAGG | MLGYTESELDEMINSIHDAKLFYARHAEVIALEEDPIFLGLLKANDFLQGLWAEGYFDNA |
| Ga0136551_100035912 | F000450 | AGGCGG | MGDRANFVFVQPNGESIVLYGHWGGYQMLANLAEAAVKAQNRWSDPSYATRIAISHLIGEGWAMETGWGLYVNQIGDNEHKIAVIDFEQRTFSLHEEAPYADKSNKVQGMKNEAIFTQDLSNFCDKYSDSLLKV* |
| Ga0136551_100035915 | F000311 | AGGAGG | MYFELTAPSQLAFKRAFWEAETIGLDPMQLEALTFNIGTGSIEKVSRIRDKYDLTESYISEYEPTGYTGRI* |
| Ga0136551_100035927 | F003663 | AGGTGG | MLATAIEIVEATKSAIFDDEIMGLAGELHTRRNEINDRDYPKYLYMYSTALASKVADLVTKACLTEAQMSVLLDTIIEMDELTETILEENE* |
| Ga0136551_100035931 | F015208 | AGG | MYKITAANDGNPIHWEREYSDELNAHEEFAKFIDWGFADEYSTINLHTPTGKCYTKIFHRNGKVVKR* |
| Ga0136551_100035933 | F000447 | AGGA | MGYIEIFRITEEGAGWVDLSEATDEEKLDLEIGLFQEGAI* |
| Ga0136551_100035936 | F084151 | AGAAG | MTITYAIWQGSILLSVNNIATSIKDIDKVIAELNDSDVAKKIKFSANIQKVEVK* |
| Ga0136551_10003594 | F004666 | N/A | MDPIMATKREYLKSKGITVGQRGRFSSAAVKAINEAESQGVKFEAETKAKKA* |
| Ga0136551_10003596 | F001019 | GGA | MTYEPSLEILEVNYSCSPGGVDMFEVYDTNEPSTVPIYETESLTKAVQYCYNLGKDFIVRTFAEWEERELMNA* |
| Ga0136551_10003598 | F014250 | AGGA | MRDIDYQFDPRLKKLVDLGESGTDILHGELKNLMLEAETQLGLAQAQEDETEEAMDSMERTYWEGQLDALTHVYQLTYDLAFAIDERIKARG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |