| Basic Information | |
|---|---|
| Taxon OID | 3300010371 Open in IMG/M |
| Scaffold ID | Ga0134125_10000011 Open in IMG/M |
| Source Dataset Name | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 334576 |
| Total Scaffold Genes | 285 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 172 (60.35%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Kellog Biological Station, Michigan | |||||||
| Coordinates | Lat. (o) | 42.3938 | Long. (o) | -85.3708 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000335 | Metagenome / Metatranscriptome | 1276 | Y |
| F000451 | Metagenome / Metatranscriptome | 1124 | Y |
| F002261 | Metagenome / Metatranscriptome | 577 | Y |
| F002448 | Metagenome / Metatranscriptome | 558 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0134125_10000011254 | F002261 | N/A | VSSWSAIDAAANVVMQQTFGEPVVYQPVQAGTAVGDPLTITAVRHARVREESGALANFEEISVNPLDLPNPPVKGDWVTAWGAQYVVTTVRQADAYGMIALALLQRAG* |
| Ga0134125_10000011256 | F002448 | N/A | VINPKTILGEWVTTLRTLPNLVAAIGDSRRIQYYTENASVFGQQTENNIRLAILSMPPGSILIAWQGTRPGRLGNALVFVHEFSLYLRAPEAASVGYEDIFNWLVNDVPSSGSLSMLHTAVDPNCEPMDFYLPSAQRNTVVISADGATFEYFEVRANLIESQNP* |
| Ga0134125_10000011262 | F000451 | N/A | MQGFGQVLADSIRARIQSGQNIYDQAAAPLKPGLTGRRGYPDYKAARGLRPVRDWTWSGHTLRCLKVLTANENRAAIGFLDEALPGRSQTASQIAFYNNRRERQWGVSQHDREAVLAAFQARPIVMLKAA* |
| Ga0134125_10000011264 | F000335 | N/A | VIMPGNLIGSTPNGVMPASLCTAFTELREYAQLQNQFHDGTIQRSQLAQTSRRTFRLSKRLNSSLLSALHSFWVSQNGGLTPFVFYNPFDVTSGQQIGSNYDPTGSNTQGRVTVAFRGNWAQVTDIARTNVQGLELVEVG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |