NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129324_10406087

Scaffold Ga0129324_10406087


Overview

Basic Information
Taxon OID3300010368 Open in IMG/M
Scaffold IDGa0129324_10406087 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)526
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.0754Long. (o)-76.1533Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033723Metagenome176Y
F074863Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0129324_104060871F033723AGGAGMTNPTSNFGWQMPTPTDLVTDLPADFEVFGQAVDT
Ga0129324_104060872F074863N/ARLAQVITTTVKHTTDAQDQADFYLTLRATPQANFTSITYQLTNPELDDQDRDSLINVFMGLPLRISDLPPNMASGTFLGFVEGWSFKAAYNEIAITLNLSPISYSLQSMKWQDVSIAESWNTITGSLTWETALVVA*

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