NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126372_10302184

Scaffold Ga0126372_10302184


Overview

Basic Information
Taxon OID3300010360 Open in IMG/M
Scaffold IDGa0126372_10302184 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1407
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055005Metagenome / Metatranscriptome139Y
F097659Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0126372_103021841F097659GGAGMKRLTQAALVCALMLALASLAAAQGTLQVPSGTPQPSMRFGNFIEVGNDVLMHIIATNQFVYNTTTNFDFERKVRDRVASRNPESTIEQGGESDNLWM
Ga0126372_103021842F055005N/AYSCAARFQGLGVSNINTPGVAATVTNPTPSNPIQAVTGTPGIPGRGGALVPTNNPQQVIAGQTNPYAIGIGGVGGSPSSGFNECAHTVTNPFNSRIGNLSHPGIYTTLSNPGTLLIPAGVRVFPLRGWEAAGWYIYKAMIDTSVLEAAFAPELAIRGGDIRKGQYNEIGGFVLWTLNPYFDIRVAGNVSLASGGTIDLAHLGNCNAPGGGGNYTTSVRCGGSDPALRGEVRFRARF*
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