NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116237_10211373

Scaffold Ga0116237_10211373


Overview

Basic Information
Taxon OID3300010356 Open in IMG/M
Scaffold IDGa0116237_10211373 Open in IMG/M
Source Dataset NameAD_USDEca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1824
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.84Long. (o)-89.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022893Metagenome / Metatranscriptome212N
F023320Metagenome / Metatranscriptome210N
F087074Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0116237_102113731F087074N/AMIQGVYIYRKGGEVIGSPLPAFDDLFLQIESDNTAAGLYFIVDFVNIDSNKKVTIKLYPKIGYNEVETYISQILRNLLNSDFESYTLNLEAKEYDETGYVSDFFMQFVVIPSIYNSFLPPLKNYYFYYYNGADYDILSSRGITLYDDDFNELSDEISITTTLNNIYKETLDPPFKKIITITHKQVCEPLLKLKYLNLHTGYYDEFGGWYIKQDTVNVEKQIYN
Ga0116237_102113732F023320GAGMKQYKALTFEVDLSGLGTEQWIQAELDYDEIAQKLIDTLIDVMREKDVEASSNLIQSLEPETKNGEIVIYADYYWKFIDKGVNGLMQSRDSEFSFKFVPASKKHALSIAKWLEFRGLATEFTTLADAYRVATATKIKGIRGRKFVEEFEREIDKIEII*
Ga0116237_102113734F022893N/AKKAKKLTISYKIKVKHFEDFLLLCSYDRADVDGFINLLSRCTEVDKEIFYNLKFADLIRFVDELVDSVDKEMYKAPKKAIKINDRYYKLIDLLNLQVAFYVDFDLVEKTPSYLLALCYTETGSYTDERNSSVDERENVMQNADVIDYMRLANFFLTWRDFLKKLKEIQKN*
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Biomedical Sciences Research Center "Alexander Fleming"
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