| Basic Information | |
|---|---|
| Taxon OID | 3300010355 Open in IMG/M |
| Scaffold ID | Ga0116242_10257358 Open in IMG/M |
| Source Dataset Name | AD_USDVca |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1695 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA | |||||||
| Coordinates | Lat. (o) | 40.12 | Long. (o) | -87.63 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007038 | Metagenome / Metatranscriptome | 359 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0116242_102573582 | F007038 | N/A | MARRIFVDTEWTAAPWLAHAELMWIGLADEEGGSWFGISAEVAIDPVANPFMSGVFRLIRPEEPRMPRLQLRDAVIDFCGDVQEFWAWIPTLDSFARSSGLGDEARTLFDRCWDIDLQMLCALVQPWPAAWPTTLHDLNAAAAAAGVAIPPRAPNHLHPRVHAEWNRQLFDRIRAAGTL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |