| Basic Information | |
|---|---|
| Taxon OID | 3300010354 Open in IMG/M |
| Scaffold ID | Ga0129333_10012047 Open in IMG/M |
| Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8203 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (53.85%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Chesapeake Bay | |||||||
| Coordinates | Lat. (o) | 39.2637 | Long. (o) | -76.0017 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001806 | Metagenome / Metatranscriptome | 631 | Y |
| F002721 | Metagenome / Metatranscriptome | 534 | Y |
| F015587 | Metagenome | 253 | Y |
| F056536 | Metagenome | 137 | N |
| F087065 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0129333_1001204712 | F015587 | N/A | MTALNLRKNTAQFLLSTAQSLLSTASFIEQAKVPNKEDIGEKLNEYRTRAAALMMPNDMAFVITPKTDV* |
| Ga0129333_1001204713 | F056536 | GAG | MLCYYPYESATERITWHGGESTMLHYQVQVDDYKGDPDWIERESQTLMGGIPCSTKELLAAMSDYYQSIVQPS* |
| Ga0129333_100120473 | F002721 | AGCAG | MAQDPRLDLGRYIQNPFNRQGQITKRLDFDELFRSRPETGEYPWNPSRFESQDLLKRGMTRKQTLNPSLNFVGNAPFFDANVEVTPEYELFEGLGRFNRPNDYDFEEGRARTAQRPQDQPDFKPEWIEAYKLSPTLNPGKIAKNPMPRMRNPDPNGYIMAMAEKRAENEVEDKPSIAQLLDRKGVVKSIPVKKEEEEGEITADANDVETNTSPGKTEGKPRVT* |
| Ga0129333_100120476 | F001806 | N/A | MDAGKRQKRVEGLEAIKNKALSLAREGRDSFEVRDFVTEAKKELAYELPDEEAFTKAMNATLAYKRQKGN* |
| Ga0129333_100120477 | F087065 | N/A | MQKQQAKSWQHDWRRKVGERPTEQNAELFHKYVEYAHQVLEEKLEAAFPYADVRQVCQPQYLFQVVSEMRSDKLSMRIYQNEEGLKLIVIHTVR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |