| Basic Information | |
|---|---|
| Taxon OID | 3300010351 Open in IMG/M |
| Scaffold ID | Ga0116248_10063621 Open in IMG/M |
| Source Dataset Name | AD_USPNca |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3562 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA | |||||||
| Coordinates | Lat. (o) | 39.88 | Long. (o) | -75.22 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015605 | Metagenome / Metatranscriptome | 253 | N |
| F021528 | Metagenome / Metatranscriptome | 218 | N |
| F078674 | Metagenome / Metatranscriptome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0116248_100636211 | F021528 | N/A | KVEYPLFQTPSHGSHYGSKAYLNAENWNLTLKPLPGGRATGAFLQLSVPKNYYGSNFYSVGEQGTKAVLSKVEGELKEKGIHTSLIEADMSRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERNIETRGLPPTMRFEHRLLNKQKIQNVYGMSKVGELFKGGYEVVKEKQVESWKASLFNFTTEEFVLLGSKQLEQEMKKFKEKFPTGWFSRFLKAYGAYYLASHAGKEVVIEALKNAEAERTMIWRAVQIFEEAERELLVLKQEEGSKKTLGALYEELRRKVCLN* |
| Ga0116248_100636216 | F078674 | AGGAG | MEALKKAIENRRAPLEVEGKAGGRIISLRVSEKMEQILEEQAQEWGMSISDTLRSILNFYFLPPLLLEAWEKKVQALIALDTEQRGENRADMNAPTQAQRIEPIFCDSEEAEEYANFIHELWEKGLKYFETLREEAKTMNRIAVKRLQVTAEALKKVAMELPEFKEVEKQ* |
| Ga0116248_100636218 | F015605 | GGAG | MIDTLKVMLNDYRISSDSEIRVQPASYELGTGTKVEYPLFETPKQRFYGAKAYLNEDNWNLTLKPFAGGGAVGAFLQLSIPKNYYGNNFYSVGEKGTEAVLSKVEGELKERGVHTNLQEADISRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNTQQEFCVYDKLAEMRERQLETG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |