NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116243_10016364

Scaffold Ga0116243_10016364


Overview

Basic Information
Taxon OID3300010344 Open in IMG/M
Scaffold IDGa0116243_10016364 Open in IMG/M
Source Dataset NameAD_JPASca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8545
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)43.77Long. (o)142.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020914Metagenome / Metatranscriptome221N
F067770Metagenome / Metatranscriptome125N
F099361Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0116243_100163644F067770GAGMIEFKYNSPVFKLGKISRSEWRELGMSARSEIVKRTRSGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGYHLPKREHFGFNKTDGNKYVEKIAKLQTIKNKKANR*
Ga0116243_100163646F020914AGGAMAIYQKYGFAIDQILSENQALPNASSVDSTNTIKLDAVADDGLHIVVCAASTTVGLASGASLEIRPKIGATEGTVTTVLPSILIKEGGQSDVSWAPGEMICQFNIPAKLIGSARYLKLNYVTSADESAEKVEAFSVRR*
Ga0116243_100163649F099361GAGGMNIKNTDSISILIANSGNQKKYHPVSELKADILADVETDETLKDIIIQGVLSNVAAPVLTTKSTIIEKSKDPTIAIDVTKNTFADTLSEDVDNWIIDFGMTTLAFNTITKLSATQMRIATTGTAEEGTIRILALKDCFDAPIVDSTVLEIEVQELEE*
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