| Basic Information | |
|---|---|
| Taxon OID | 3300010343 Open in IMG/M |
| Scaffold ID | Ga0074044_10000295 Open in IMG/M |
| Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 49830 |
| Total Scaffold Genes | 59 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (62.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Calvert Island, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002480 | Metagenome / Metatranscriptome | 555 | Y |
| F003185 | Metagenome / Metatranscriptome | 502 | Y |
| F003910 | Metagenome / Metatranscriptome | 462 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0074044_1000029537 | F003185 | GGA | MHSEHDSCHTSTMRISNWDIPRNLMKTRLRWSFTIAACTLFMVNIALAQETPKQDRSASVTIVTAGDISVTRAADGKTAVSINFVPGRAKSGDTRITISGPYSLDVNGGVKEVNGPQGVELHVLSHEELRFEAPEIGLWEQSHKFTQNSACMKIPKYPGCGNPVCDQYGHPGDQCRYNSGSGCSCVAPGGGPCSETANPPQ* |
| Ga0074044_1000029539 | F002480 | N/A | MSSSPQSRPPWRFPRAHLEGQNPAVLRFANGQTTGANLQVISVTGGLLSLPQPVVQGSQVKLIFLTGAGAVLGGAEMLPPVTNGLQPFRFVSLPADDHRRLGALVGQRSSQSEYEQAWIEKLRAASAQHSEPRRWKLKVAEVVGMLMIGLATAAYLLHFGLFK* |
| Ga0074044_1000029546 | F003910 | AGG | MSASPHSFSKLPRGPDVLGELLHSLSQPLTGLRCSLELSLGLPLEHSLELSIEEVAEQQHESVAAALQQAEKVIGMIQLMREYLDAGQPGPEAYSAALAPAMRSVIEELSSIAAVRGVQLRLVGRCSATVPVPESRLRLALQYLITTIIEAQPASGKVMLLLGEGPAGAVLRAEGERGFRELAGATSTLRRVRLAIASRVFETAGASLVLGDGGPTGVDPAGFVLRIPRRVGAPA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |